We hypothesize that the Wortmannin nmr urease cassette and/or the arc gene cassettes are important for L. hongkongensis to survive in acidic environments and macrophages. In this study, we tested this hypothesis by systematically knocking out genes in the urease cassette and the two arc gene cassettes in L. hongkongensis and examining their effects in the survival of the single, double and triple knockout mutants in acidic environment in vitro, in macrophages and in a mouse model. Figure 1 Genetic organization of urease gene cassette and the two adjacent arc gene

cassettes. A, The open vertical triangles represent the locations of the gene cassettes, and the numbering is according to the sequence find more of the HLHK9 strain. B, Schematic illustration showing the differences in the sequences of the urease gene cassettes between L. hongkongensis HLHK9 and the naturally urease-negative strain HLHK30. Vertical triangles represent the locations of polymorphic residues, and the numbering is according to the sequence of the HLHK9 strain. Methods Ethics statement The experimental protocols were approved by the Committee on the Use of Live Animals in Teaching and Research, The University of Hong Kong, in accordance with the Guidelines laid down by the NIH in the USA regarding the care and use of animals for experimental

procedures. Bacterial strains and growth conditions The bacterial strains and plasmids used in this study are listed either Quizartinib datasheet in Table  1. The parental L. hongkongensis strain HLHK9, was a clinical isolate from a patient in Hong Kong [3], for which the complete genome has been sequenced [17]. Streptomycin (Sm)-resistant HLHK9 strain was obtained by serial passage of HLHK9 cells on Luria broth (LB) agar with increasing concentrations of Sm, starting at 10 μg/ml, and increased up to 100 μg/ml. Unless stated otherwise, all HLHK9 and its derivate strains used in this study were

Sm resistant. HLHK9 and its derivatives were grown in brain heart infusion (BHI) broth or on BHI agar (BHA) plates (BBL, BD) whereas all other E. coli strains were grown in LB or on LB agar (LBA) plates (BBL, BD). Media were supplemented with antibiotics (Sigma-Aldrich) when appropriate: ampicillin (Amp) (100 μg/ml), kanamycin (Km) (50 μg/ml), chloramphenicol (Cm) (15 μg/ml), tetracycline (Tet) (12.5 μg/ml) and Sm (100 μg/ml). Growth phase and bacterial cell density were determined by measuring absorbance spectrophotometrically at optical density (OD)600. Table 1 Bacterial strains and plasmids used in this study Strains or plasmids Characteristics Source or reference Strains     E. coli DH5α F-, Ф80d lacZ∆M15, ∆(lacZYA-argF)U169, endA1, recA1, hsdR17(rk-, mk+) deoR, thi-1, supE44, λ-, gyrA96(Nalr), relA1 Invitrogen E. coli SM10(λ pir) thi thr leu tonA lacY supE recA::RP4-2-TC::Mu Km λpir [23] L.