Characterization of these mutations revealed that the majority are short duplications flanked by short, directly repeated sequences that may be created by multiple HR mechanisms [18]. Our data confirm the

previous analyses as we observed a 50-fold increased rate of spontaneous mutation at the CAN1 locus in a rad27::LEU2 mutant (Table  2; Additional file 1: Table S2). In contrast, the rad59::LEU2, rad59-Y92A, rad59-K174A, and rad59-F180A alleles did not have significant effects on the rate of CAN1 mutation, nor did the missense alleles have significant effects when combined with the rad27::LEU2 allele. Table 2 Rates of mutation and unequal sister chromatid recombination in wild-type and mutant haploid WH-4-023 concentration strains Genotype Mutation rate (10-7) USCR rate (10-6) Wild-type 4.0 (3.8, 7.4) [1] 1.0 (0.8, 1.2) [1]

rad51::LEU2 n.d. 1.4 (1.0, 1.8) Autophagy Compound Library cost [+1.4] rad59::LEU2 7.5 (6.6, 8.6) [+1.9] 0.82 (0.43, 1.4) [-1.3] rad59-Y92A 4.4 (3.9, 5.3) [+1.1] 1.3 (1.1, 1.8) [+1.3] rad59-K174A 3.2 (1.8, 5.5) [-1.3] 1.1 (0.85, 2.1) [+1.1] rad59-F180A 4.8 (4, 6.9) [+1.2] 0.61 (0.47, 0.95) [-1.6] rad27::LEU2 200 (90, 590) [+50] 47 (39, 100) [+47] rad27::LEU2 rad59-Y92A 220 (60, 510) [+55] 39 (25, 99) [+39] rad27::LEU2 rad59-K174A 130 (110, this website 190) [+32.5] 38 (33, 53) [+38] rad27::LEU2 rad59-F180A 190 (110, 500) [+47.5] 60 (49, 120) [+60] Rates of CAN1 mutation or USCR were determined from at least 10 independent cultures as described in the Methods. The 95% confidence intervals are in parentheses. Fold decreases (−) and increases (+) from wild-type are in brackets. n.d. – not determined. Loss of RAD27 has been previously observed to strongly stimulate unequal sister chromatid recombination (USCR) (Additional file 1: Figure S2) [8, 50]. We observed a 47-fold increased rate of USCR in rad27::LEU2 cells (Table  2; STK38 Additional file 1: Table S2), confirming the previous results, while loss of RAD51 had no significant effect. The rad59::LEU2, rad59-Y92A, rad59-K174A, and rad59-F180A alleles did not have significant effects on the rate of USCR, nor did the missense mutations have effects in combination with rad27::LEU2, suggesting that RAD59

does not influence this mechanism of genome rearrangement. Disrupting lagging strand synthesis by imposing a defect in the processivity of Pol δ, or loss of RAD27, was shown previously to substantially increase rates of loss of heterozygosity (LOH) by chromosome loss, and HR between homologs [2, 8, 10, 11, 18]. In the present analysis, LOH was examined in diploid strains by simultaneously monitoring changes in the genetic state at three loci on chromosome V (HXT13, CAN1 and HOM3) in order to separately determine rates of chromosome loss (reduction to hemizygosity at all three loci), terminal LOH (homozygosity at HXT13 and CAN1), and interstitial LOH (homozygosity at CAN1) (Additional file 1: Figure S3; Table  3; Additional file 1: Table S2).